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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THYM cis rs10935120 1 rs4367113 chr3:134287975 ANAPC13 chr3:134196547-134204865:- 0.58 8.01 2.88E-12 Height
THYM cis rs10935120 1 rs4367113 chr3:134287975 CEP63 chr3:134204575-134293852:+ 0.41 6.04 2.93E-8 Height
THYM cis rs10935120 1 rs4368544 chr3:134300014 ANAPC13 chr3:134196547-134204865:- -0.59 -8.1 1.9E-12 Height
THYM cis rs10935120 1 rs4368544 chr3:134300014 CEP63 chr3:134204575-134293852:+ -0.41 -5.93 4.96E-8 Height
THYM cis rs4372836 1 rs4372836 chr2:28973883 TRMT61B chr2:29072690-29093175:- -0.5 -4.16 6.98E-5 Body mass index
THYM cis rs2275426 1 rs4376778 chr1:46288846 CCDC163P chr1:45960581-45965646:- -0.49 -5.85 6.8E-8 Body mass index
THYM cis rs2243480 1 rs437889 chr7:65509234 CCT6P1 chr7:65216092-65228661:+ 0.67 5.68 1.48E-7 Diabetic kidney disease
THYM cis rs9457247 1 rs439237 chr6:167391392 RNASET2 chr6:167343008-167412795:- -0.47 -7.83 7.0E-12 Crohn's disease
THYM cis rs344081 1 rs439295 chr3:156572455 LEKR1 chr3:156544076-156763918:+ -0.72 -4.3 4.1E-5 Bone mineral density
THYM cis rs9457247 1 rs439553 chr6:167391212 RNASET2 chr6:167343008-167412795:- -0.47 -7.83 7.0E-12 Crohn's disease
THYM cis rs9815354 1 rs4408846 chr3:41753679 ULK4 chr3:41288091-42003660:- 0.99 10.12 9.3E-17 Diastolic blood pressure
THYM cis rs10935120 1 rs4417907 chr3:134291363 ANAPC13 chr3:134196547-134204865:- 0.58 8.05 2.33E-12 Height
THYM cis rs10935120 1 rs4417907 chr3:134291363 CEP63 chr3:134204575-134293852:+ 0.4 5.81 8.19E-8 Height
THYM cis rs10935120 1 rs4423809 chr3:134300107 ANAPC13 chr3:134196547-134204865:- -0.57 -7.63 1.8E-11 Height
THYM cis rs10935120 1 rs4423809 chr3:134300107 CEP63 chr3:134204575-134293852:+ -0.42 -6.1 2.28E-8 Height